Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs6599001 chr3:39074151 C/T 0.000124 178 7.47 16.37 15.27 KM Plot
PAAD rs6599429 chr4:2383892 T/C 0 174 0.4 16.1 15.42 KM Plot
PAAD rs661019 chr10:3586581 C/T 1.69E-6 178 24.77 13.13 16.07 KM Plot
PAAD rs66492745 chr2:70476368 A/G 0 177 15.3 18.43 1.03 KM Plot
PAAD rs66495839 chr11:67403991 TA/T 2.48E-5 171 15.27 15.87 7.77 KM Plot
PAAD rs66506031 chr19:4778897 G/C 1.54E-5 174 15.33 16.17 4.1 KM Plot
PAAD rs66522828 chr2:70496277 G/A 0 178 15.33 18.43 1.03 KM Plot
PAAD rs66547932 chr2:70478744 C/G 0 178 15.33 18.43 1.03 KM Plot
PAAD rs66558684 chr2:178979569 C/G 0 170 15.57 15.1 2.2 KM Plot
PAAD rs66637228 chr3:136351210 G/A 0.000167 178 15.67 13.28 4 KM Plot
PAAD rs66641686 chr2:70467171 T/G 0 178 15.33 18.43 1.03 KM Plot
PAAD rs6664296 chr1:36606620 A/G 5.68E-5 176 17.83 12.2 16.27 KM Plot
PAAD rs6664471 chr1:36606757 A/G 2.85E-5 173 19.47 12.18 16.27 KM Plot
PAAD rs6670358 chr1:33754770 C/G 2.49E-6 173 4.92 16.1 15.57 KM Plot
PAAD rs6670552 chr1:33724895 C/T 4.62E-5 178 6.17 16.1 15.48 KM Plot